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Intrinsic fluorescence spectra of fresh normal and cancerous human breast tissues were measured using two selective excitation wavelengths including 290nm and 340nm. Dual-wavelength excitation may reveal more molecular information than single-wavelength excitation. In the meantime, it is significantly faster than the acquisition of excitation-emission (EEM) matrix. Unsupervised machine learning algorithms principal component analysis (PCA) and non-negative matrix factorization (NMF) were used to reduce the dimensionality of the spectral data. The relative concentrations of the basis spectra retrieved by PCA and NMF were considered features of the samples and used to distinguish normal and malignant tissues. The performances of classification using support vector machine (SVM) based on PCA and NMF features were compared. The classification using spectral data with dual-wavelength excitation was compared with single-wavelength excitation. Classification based on NMF-retrieved components from spectral data with dual-wavelength excitation yielded the best performance. © 2019 SPIE.

ZnO and Fe-doped ZnO nanoparticles were analyzed in ethanol solution and dry powder form using fluorescence spectroscopy. Near-band-edge emission (NBE) and defect emission (DE) peaks were studied. A blue-shift was observed with the NBE emission peak. © OSA 2019. The Author(s).

The Stokes shift spectra (S3) of human cancerous and normal prostate tissues were collected label free at a selected wavelength interval of 40 nm to investigate the efficacy of the approach based on three key molecules—tryptophan, collagen, and reduced nicotinamide adenine dinucleotide (NADH)—as cancer biomarkers. S3 combines both fluorescence and absorption spectra in one scan. The S3 spectra were analyzed using machine learning (ML) algorithms, including principal component analysis (PCA), nonnegative matrix factorization (NMF), and support vector machines (SVMs). The components retrieved from the S3 spectra were considered principal biomarkers. The differences in the weights of the components between the two types of tissues were found to be significant. Sensitivity, specificity, and accuracy were calculated to evaluate the performance of SVM classification. This research demonstrates that S3 spectroscopy is effective for detecting the changes in the relative concentrations of the endogenous fluorophores in tissues due to the development of cancer label free. © 2023 Optica Publishing Group.

Native fluorescence spectra play important roles in cancer detection. It is widely acknowledged that the emission spectrum of a tissue is a superposition of spectra of various salient fluorophores. However, component quantification is essentially an ill-posed problem. To address this problem, the native fluorescence spectra of normal human very low (LNCap), moderately metastatic (DU-145), and advanced metastatic (PC-3) cell lines were studied by the selected wavelength of 300 nm to investigate the key fluorescent molecules such as tryptophan, collagen and NADH. The native fluorescence spectra of cancer cell lines at different risk levels were analyzed using various machine learning algorithms for feature detection and develop criteria to separate the three types of cells. Principal component analysis (PCA), nonnegative matrix factorization (NMF), and partial least squares fitting were used separately to reduce dimension, extract features and detect biomolecular alterations reflected in the spectra. The scores corresponding to the basis spectra were used for classification. A linear support vector machine (SVM) was used to classify the spectra of the cells with different metastatic ability. In detection of signals coming from tryptophan and NADH with observed data corrupted by noise and inference, a sufficient statistic can be obtained based on the basis spectra retrieved using nonnegative matrix factorization. This work shows changes of relative contents of tryptophan and NADH obtained from native fluorescence spectroscopy may present potential criteria for detecting cancer cell lines of different metastatic ability. © 2018 SPIE.

Pancreatic islet dysfunction leading to insufficient glucose-stimulated insulin secretion triggers the clinical onset of diabetes. How islet dysfunction develops is not well understood at the cellular level, partly owing to the lack of approaches to study single islets longitudinally in vivo. Here, we present a noninvasive, high-resolution system to quantitatively image real-time glucose metabolism from single islets in vivo, currently not available with any other method. In addition, this multifunctional system simultaneously reports islet function, proliferation, vasculature and macrophage infiltration in vivo from the same set of images. Applying our method to a longitudinal high-fat diet study revealed changes in islet function as well as alternations in islet microenvironment. More importantly, this label-free system enabled us to image real-time glucose metabolism directly from single human islets in vivo for the first time, opening the door to noninvasive longitudinal in vivo studies of healthy and diabetic human islets. © 2016. Published by The Company of Biologists Ltd.

Convolutional neural network (CNN) based deep learning is used to analyze spectral data collected by visible resonance Raman (VRR) spectroscopy to distinguish human glioma tumors from healthy brain tissues using binary classification and identify the cancer grades of the glioma tumors using multi-class classification. Classification was performed using both raw spectral data and baseline-subtracted data for comparison. The classification using both datasets yielded high accuracy, with the results obtained from baseline subtracted spectra slightly better than that obtained from raw spectra. The study showed VRR combined with deep learning provides a robust molecular diagnostic tool for accurately distinguishing glioma tumors from normal tissues and glioma tumor tissues at different cancer grades. Deep learning aided VRR technique may be used for in-situ intraoperative diagnosis of brain cancer. It may help a surgeon to identify cancer margins and even cancer grades during surgery. © COPYRIGHT SPIE. Downloading of the abstract is permitted for personal use only.

Currently, liquid biopsy method is mainly used for tumor detection based on genomic molecular alterations in vitro. Liquid biopsy is superior to traditional tissue biopsy techniques and its diagnosis time of disease and repeated diagnosis of liquid biopsy are new breakthroughs in clinical application. Liquid biopsy method can be used to detect most human disease based on genetic biomarkers from body fluids, among which, special biomarkers in blood and cerebrospinal fluid (CSF) samples are the main research objects, and have made good achievements in preliminary clinical applications. The application of optical spectroscopy in the field of liquid biopsy has aroused great interest among researchers and demonstrated the potential of its clinical application for oncology. The aim of this study is to reveal the optical spectroscopic characteristics of the main biochemical components of CSF of brain tumor using visible resonance Raman (VRR) spectroscopy ex vivo. Tumor-associated proteins, glucose, lactate and other metabolites released to CSF can be used as markers for liquid biopsy. We studied the VRR spectra of CSF samples from 7 types of brain tumor patients. The characteristic VRR modes that were found and may be used as a combination of multiple analyte biomarkers include amyloid-β and tau protein, excess neurotransmitters such as glutamic acid derived from the exchange with interstitial fluid (ISF), DNA, glucose, lactate, etc. for optical liquid biopsy analyses. Another interesting finding was that CSF of different types of tumors showed different images similar to the crystallization of water under the optical microscope. Considering our previous study, the current study on CSF provides another proof that the VRR system can provide a complete scan region of 200 - 4000cm-1 as a clinical tool for non-invasive diagnosis of brain disease. © 2024 SPIE.

Resonance Raman spectroscopy is used for rapid detection of skin BCC cancer. The cross-validated classification accuracy is achieved to be as high as 98% using nonnegative matrix factorization along with support vector machine statistical method. © OSA 2017.

A VRR-LRR analyzer with handheld fiber‐optic probe is reported for the first time for diagnosis of brain GBM in vivo. The sensitivity for identification is 80% compared with histopathology examination. © OSA 2019. The Author(s).

Laser-induced fluorescence (LIF) technique was used to generate spectral signatures of endogenous fluorophores relevant to the tissue molecular composition changes in human brain glioma tumors. The goal is to study the changes of fluorescence emission spectra from endogenous fluorophores in human brain glioma of different grades, and to find new biomarkers for prognostic optical molecular pathological diagnosis. Two hundred and thirty-seven (237) native fluorescence spectra from 61 subjects were measured using LabRAM HR Evolution micro photoluminescence (PL) system for four grades of glioma tumors in ex-vivo. The differences of four grades of glioma tumors were identified by the characteristic fluorophores fingerprints under the excitation laser wavelength at UV 325nm. To our best knowledge, this is the first report for human brain study using this technique. The fluorescence peaks of biomarkers with major contribution were found, including tryptophan, collagen, elastin, reduced nicotinamide adenine dinucleotide (NADH), flavin adenine dinucleotide (FAD) and phospholipids that play important roles in the cellular energy metabolism and glycolysis pathway. The ratios of peak intensities and the peak positions in fluorescence spectra of may be used to diagnose human brain diseases or to guide biopsy during surgical resection. © 2019 SPIE.