Your search

The course-based research experience (CRE) with its documented educational benefits is increasingly being implemented in science, technology, engineering, and mathematics education. This article reports on a study that was done over a period of 3 years to explicate the instructional processes involved in teaching an undergraduate CRE. One hundred and two instructors from the established and large multi-institutional SEA-PHAGES program were surveyed for their understanding of the aims and practices of CRE teaching. This was followed by large-scale feedback sessions with the cohort of instructors at the annual SEA Faculty Meeting and subsequently with a small focus group of expert CRE instructors. Using a qualitative content analysis approach, the survey data were analyzed for the aims of inquiry instruction and pedagogical practices used to achieve these goals. The results characterize CRE inquiry teaching as involving three instructional models: 1) being a scientist and generating data; 2) teaching procedural knowledge; and 3) fostering project ownership. Each of these models is explicated and visualized in terms of the specific pedagogical practices and their relationships. The models present a complex picture of the ways in which CRE instruction is conducted on a daily basis and can inform instructors and institutions new to CRE teaching.

The organic component of the molluscan shell allows for orderly biomineralization and ensures structural integrity that is crucial to survival. This organic contribution to the shell typically composes 2-5% of the total adult shell by weight. Because macro- and microstructure of the shell is known to vary with ontogeny and across taxa, we examined if the organic to mineral ratio components in shell also varied with growth across taxa. To assess intraspecific differences in the organic to mineral ratio of the shell during growth, we examined ratios in three marine [Crepidula fornicata (Linnaeus, 1758), Littorina littorea (Linnaeus, 1758), and Littorina saxatilis (Olivi, 1792)] and two freshwater [Corbicula fluminea (Müller, 1774) and Bellamya chinensis (Gray, 1834)] mollusks across size ranges. In the marine gastropods, the average organic component by weight of the small size class was significantly larger than the average organic proportions of the medium and large size classes. The smallest size class of L. saxatilis had an average shell organic proportion of 11.12%, while the smallest size classes of C. fornicata (3.53%) and L. littorea (2.60%) had percentages below 5%. The smallest size class of C. fluminea had a greater average shell organic proportion than the largest size class (6.19% vs 2.68% organics). Adult specimens of B. chinensis had an average shell organic proportion of 3.93%, while in utero shelled juveniles had an average of 10.05%. In both freshwater and marine species, the smallest size class had a greater organic proportion. As the organic matrix is energetically more expensive than the calcified shell portion, we hypothesize that energy expended in these smaller (usually pre-reproductive maturity) stages of growth allows for a more rapid production of shell and that this “expense” is a valuable trade-off for the protection the shell offers young mollusks.

Astrangia poculata inhabits coasts near dense human populations in the northeastern United States and may be exposed to elevated pollutants. No studies have assessed heavy metal concentration in temperate corals despite their proximity to anthropogenic activity. We collected colonies four times in one year and analyzed coral tissue for As, Cd, Cr, Pb, and Zn. Most heavy metals except for As were 1.5–3.3 times lower in summer compared to other seasons. Pb, As, and Cd were three orders of magnitude higher than concentrations for other Narragansett Bay benthic species, suggesting that A. poculata bioaccumulates more readily and/or inhabits more contaminated areas of the Bay. Zn, Pb, and As had similar concentrations to tropical corals inhabiting anthropogenically polluted sites. While physiological impacts are unknown, this population of A. poculata may have a higher tolerance for heavy metal pollution than most scleractinians, making it an interesting candidate for future studies. © 2021 Elsevier Ltd

Across the planet, winter de-icing practices have caused secondary salinization of freshwater habitats. Many amphibians are vulnerable because of permeable skin and reliance on small ponds, where salinity can be high. Early developmental stages of amphibians are especially sensitive to salt, and larvae developing in salt-polluted environments must osmoregulate through ion exchange in gills. Though ionoregulation in amphibian gills is generally understood, the role of gill morphology remains poorly described. Yet gill structure should affect ionoregulatory capacity, for instance in terms of available surface area. As larval amphibian gills also play critical roles in gas exchange and foraging, changes in gill morphology from salt pollution potentially affect not only osmoregulation, but also respiration and feeding. Here, we used an exposure experiment to quantify salinity effects on larval gill morphology in wood frogs (Rana sylvatica). We measured a suite of morphological traits on gill tufts—where ionoregulation and gas exchange occur—and on gill filters used in feeding. Larvae raised in elevated salinity developed larger gill tufts but with lower surface area to volume ratio. Epithelial cells on these tufts were less circular but occurred at higher densities. Gill filters showed increased spacing, likely reducing feeding efficiency. Many morphological gill traits responded quadratically, suggesting that salinity might induce plasticity in gills at intermediate concentrations until energetic demands exceed plasticity. Together, these changes likely diminish ionoregulatory and respiratory functionality of gill tufts, and compromise feeding functionality of gill filters. Thus, a singular change in aquatic environment from a widespread pollutant appears to generate a suite of consequences via changes in gill morphology. Critically, these changes in traits likely compound the severity of fitness impacts in populations dwelling in salinized environments, whereby ionoregulatory energetic demands should increase respiratory and foraging demands, but in individuals who possess structures poorly adapted for these functions. © 2021 Elsevier Ltd

Assessing physiological responses that correspond to the normal range of seasonal variation can provide a better understanding of how environmental stressors may impact physiology. Most tropical corals exhibit seasonal variation in their host and symbiont physiology within a narrow range of environmental conditions. In temperate regions and at the northern end of its distribution, Astrangia poculata must adapt to wide ranges in seasonal variability. The species is facultatively symbiotic, and it is unclear if or how symbiotic state and, consequently, host physiology is affected by environmental seasonality. We collected colonies of A. poculata with a visible range of symbiotic states from Fort Wetherill State Park in Jamestown, RI in fall, winter, spring, and summer seasons of 2018–2019. We measured physiological parameters, including symbiotic state [chlorophyll (Chl) a and c2], total lipid content, and stable carbon (δ13C) and nitrogen (δ15N) isotopes of the host and symbiont. Seasonal variation occurred in all physiological parameters we studied. Specifically, Chl a, c2, and lipid content all reached low points in the spring, suggesting a lag, where the consequences of the coldest temperatures in the winter took up to three months to manifest in the tissue. There were seasonal fluctuations in host:symbiont ratios of δ13C, reflecting changing rates of autotrophy relative to heterotrophy during the year. While some autotrophy occurred during the year, isotopic evidence indicated that carbon acquisition in A. poculata was mostly heterotrophic in the winter. Based on δ15N, the symbiont was primarily responsible for nitrogen assimilation, although other sources likely contributed. Both carbon acquisition and nitrogen acquisition were more similar to that of other aposymbiotic coral species, regardless of the symbiotic state of A. poculata. Therefore, it may be more appropriate to view A. poculata as a unique aposymbiotic coral that is capable of symbiosis, rather than the reverse. © 2021, The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

The sense of taste is associated with the evaluation of food and other environmental parameters such as salinity. In aquatic mammals, anatomic and behavioral evidence of the use of taste varies by species and genomic analysis of taste receptors indicates an overall reduction and, in some cases, complete loss of intact bitter and sweet taste receptors. However, the receptors used by taste buds in the oral cavity are found on cells in other areas of the body and play an important role in immune responses. In the respiratory tract, an example of such cells is solitary chemosensory cells (SCCs) which have bitter and sweet taste receptors. The bitter receptors detect chemicals given off by pathogens and initiate an innate immune response. Although many aquatic mammals may not have a role for taste in the assessment of food, they likely would benefit from the added protection that SCCs provide, especially considering respiratory diseases are a problem for many aquatic mammals. While evidence indicates that some species do not possess functional bitter receptors for taste, many do have intact bitter receptor genes and it is important for researchers to be aware of all roles for these receptors in homeostasis. Through a better understanding of the anatomy and physiology of aquatic mammal's respiratory systems, better treatment and management is possible. © 2021 American Association for Anatomy.

While many studies have documented tamoxifen's benefits as an adjuvant therapy in the treatment and prevention of recurrent breast cancer in estrogen receptor positive (ER+) breast carcinoma, this beneficial effect may decrease with long-term tamoxifen use. This experimental study was designed to compare the cytotoxic responses of ER+ primary breast cancer solid tumors derived from the MCF7 cell line to experimental therapeutics, including genistein, tamoxifen, all-trans retinoic acid (ATRA) and parthenolide in the presence and absence of exogenous beta-estradiol. The results of this study suggest that the growth inhibitory effects of tamoxifen, were dependent on beta-estradiol levels. In contrast, the cytotoxic effects of the isoflavone soy derivative, genistein, were observed to be independent of exogenous estrogen. Moreover, combined therapy using tamoxifen and genistein produced enhanced cytotoxic effects also independent of beta-estradiol levels. Additional studies involving the use of the novel agents all trans retinoic acid (ATRA) and parthenolide produced notable tumor responses and combined effects that were also estrogen-independent. Overall, these preclinical research findings suggest possible clinical applications suggesting that genistein might be a useful clinical adjuvant, particularly in post-menopausal women in whom breast cancer occurs more frequently. Moreover, this research suggests that combined treatment approaches involving the use of tamoxifen in conjunction with agents that inhibit NFkappaB pathway signaling, such as parthenolide and genistein, warrant further study.

Humans are rapidly transforming the structural configuration of the planet's ecosystems, but these changes and their ecological consequences remain poorly quantified in underwater habitats. Here, we show that the loss of forest-forming seaweeds and the rise of ground-covering 'turfs' across four continents consistently resulted in the miniaturization of underwater habitat structure, with seascapes converging towards flattened habitats with smaller habitable spaces. Globally, turf seascapes occupied a smaller architectural trait space and were structurally more similar across regions than marine forests, evidencing habitat homogenization. Surprisingly, such habitat convergence occurred despite turf seascapes consisting of vastly different species richness and with different taxa providing habitat architecture, as well as across disparate drivers of marine forest decline. Turf seascapes contained high sediment loads, with the miniaturization of habitat across 100s of km in mid-Western Australia resulting in reefs retaining an additional ~242 million tons of sediment (four orders of magnitude more than the sediments delivered fluvially annually). Together, this work demonstrates that the replacement of marine forests by turfs is a generalizable phenomenon that has profound consequences for the ecology of temperate reefs., (C) 2021 John Wiley & Sons, Ltd

U.S. SEER (Surveillance Epidemiology and End Results) data for age-adjusted mortality rates for all cancers combined for all races show only a modest overall 13% decline over the past 35 years. Moreover, the greatest contributor to cancer mortality is treatment-resistant metastatic disease. The accepted therapeutic paradigm for the past half-century for the treatment of advanced cancers has involved the use of systemic chemotherapy drugs cytotoxic for cycling cells (both normal and malignant) during DNA synthesis and/or mitosis. The failure of this therapeutic modality to achieve high-level, consistent rates of disease-free survival for some of the most common cancers, including tumors of the lung, colon breast, brain, melanoma, and others is the focus of this paper. A retrospective assessment of critical milestones in cancer chemotherapy indicates that most successful therapeutic regimens use cytotoxic cell cycle inhibitors in combined, maximum tolerated, dose-dense acute treatment regimens originally developed to treat acute lymphoblastic leukemia and some lymphomas. Early clinical successes in this area led to their wholesale application to the treatment of solid tumor malignancies that, unfortunately, has not produced consistent, long-term high cure rates for many common cancers. Important differences in therapeutic sensitivity of leukemias/lymphomas versus solid tumors can be explained by key biological differences that define the treatment-resistant solid tumor phenotype. A review of these clinical outcome data in the context of recent developments in our understanding of drug resistance mechanisms characteristic of solid tumors suggests the need for a new paradigm for the treatment of chemotherapy-resistant cancers. In contrast to reductionist approaches, the systemic approach targets both microenvironmental and systemic factors that drive and sustain tumor progression. These systemic factors include dysregulated inflammatory and oxidation pathways shown to be directly implicated in the development and maintenance of the cancer phenotype. The paradigm stresses the importance of a combined preventive/therapeutic approach involving adjuvant chemotherapies that incorporate anti-inflammatory and anti-oxidant therapeutics.

Post-translational phosphorylation is essential to human cellular processes, but the transient, heterogeneous nature of this modification complicates its study in native systems. We developed an approach to interrogate phosphorylation and its role in protein-protein interactions on a proteome-wide scale. We genetically encoded phosphoserine in recoded E. coli and generated a peptide-based heterologous representation of the human serine phosphoproteome. We designed a single-plasmid library encoding >100,000 human phosphopeptides and confirmed the site-specific incorporation of phosphoserine in >36,000 of these peptides. We then integrated our phosphopeptide library into an approach known as Hi-P to enable proteome-level screens for serine-phosphorylation-dependent human protein interactions. Using Hi-P, we found hundreds of known and potentially new phosphoserine-dependent interactors with 14-3-3 proteins and WW domains. These phosphosites retained important binding characteristics of the native human phosphoproteome, as determined by motif analysis and pull-downs using full-length phosphoproteins. This technology can be used to interrogate user-defined phosphoproteomes in any organism, tissue, or disease of interest.

Micronutrients applied as nanoparticles of metal oxides have shown efficacy in vegetable and other crops for improving yield and reducing Fusarium diseases, but their role in ornamental crop management has not been investigated. In 2017, 2018, and 2020, nanoparticles of CuO, Mn2O3, or ZnO were foliarly applied at 500 mug/mL (0.6 mg/plant) to chrysanthemum transplants and planted in potting soil noninfested or infested with Fusarium oxysporum f. sp. chrysanthemi. An untreated control and a commercial fungicide, Fludioxonil, was also included. Chrysanthemums treated with nanoscale CuO had a 55, 30, and 32% reduction in disease severity ratings compared to untreated plants in 2017, 2018, and 2020, respectively. Specifically, the average dry biomass for the three years was reduced 22% by disease, but treatment with nanoscale CuO led to a 23% increase when compared to controls. Similar trends with plant height were observed. Horticultural quality was improved 28% with nano CuO and was equal to the fungicide. Nanoscale Mn2O3 and the fungicide did not consistently reduce disease ratings or increase dry biomass each year. Nanoscale ZnO was ineffective. Nanoscale CuO-treated plants had 24 to 48% more Cu/g tissue than controls (P < 0.001). These findings agree with past reports on food crops where single applications of nanoscale CuO improved plant health, growth, and yield and could offer significant impacts for managing plant diseases on ornamentals.

When restoring gene flow for conservation management, genetic variation should be viewed along a continuum of genetic divergence between donor and recipient populations. On the one hand, maintaining local adaptation (low divergence between donors and recipients) can enhance conservation success in the short term. On the other hand, reducing local adaptation in the short term by increasing genetic diversity (high divergence between some donors and recipients) might have better long-term success in the face of changing environmental conditions. Both Hoffman et al. (2020) and a paper we previously published in a Special Issue on Maladaptation in Applied Conservation (Derry et al., 2019) provide frameworks and syntheses for how best to apply conservation strategies in light of genetic variation and adaptation. A key difference between these two studies was that whereas Derry et al. (2019) performed a quantitative meta-analysis, Hoffman et al. (2020) relied on case studies and theoretical considerations, yielding slightly different conclusions. We here provide a summary of the two studies and contrast of the main similarities and differences between them, while highlighting terminology used to describe and explain main concepts. © 2021 The Authors. Evolutionary Applications published by John Wiley & Sons Ltd

Fish and wildlife agencies produce a bounty of information aimed at the public. Under the right circumstances, that information can be compiled into scientifically useful data to complement full scientific studies. This poster describes some preliminary results from a project to compile mentions of gamefish species, locations, and sizes throughout the Long Island Sound and surrounding waters from the Weekly Fishing Report (2006, 2008-2018) and the Trophy Fish Report (2009-2017), both produced by the Connecticut Dept. of Energy and Environmental Protection. The dataset consists of more than 20,000 entries from the reports collected weekly by DEEP employees from tackle shops and charter companies. The current portion of the analysis is to determine the characteristics of the dataset, such as entry types, species counts, and some general trends. Presented at the 2019 NEAFWA Conference in Groton, CT and the 2019 CSCU Faculty Research Conference at SCSU in New Haven, CT.

As a fully aquatic mammal, the Florida manatee (Trichechus manatus latirostris) spends a limited amount of time at the water's surface. However, as a mammal that breathes air, they do need to filter, warm, and humidify that air, and anecdotal evidence indicates manatees have a sense of smell. This study characterized the nasal turbinate system, including identification of the olfactory epithelium, and compared it to other mammals using a combination of gross and micro-anatomic examination. Major turbinates were present, including nasal, maxillary, and ethmoturbinates, but with minimal convolution. The respiratory epithelium was found throughout much of the nasal cavity and covered maxillary and nasal turbinates, as well as the septum. Mucus-producing cells and cavernous veins were extensive. The olfactory epithelium was found in the dorsocaudal ethmoturbinates. As a herbivore that feeds predominantly underwater, the manatee likely relies on taste and touch for assessing food and, therefore, does not need to use smell in the same way as other marine mammals such as mysticetes (Bouchard et al., 2019) and pinnipeds (Kowalewsky et al., 2006). However, there are still substantial numbers of olfactory cells, especially considering the decreased amount of exposure time to odorants when breathing at the surface. Therefore, the question remains of why manatees have maintained their ability to smell while other fully aquatic species such as odontocetes have not. Future research should focus on a combination of behavioral and molecular techniques to fully understand the olfactory capabilities of the Florida manatee. © 2020, European Association for Aquatic Mammals.

Vineyards in the New England region of the USA were surveyed for the occurrence of grapevine viruses. A total of ten vineyards were visited and 62 composite samples of leaves with the petioles were collected from symptomatic grapevines (Vitis spp.). All of the samples were assayed by double-antibody sandwich enzyme-linked immunosorbent assays (DAS-ELISA) using antibodies specific for four major grapevine leafroll-associated viruses (GLRaV-1, GLRaV-2, GLRaV-3, and GLRaV-4), grapevine fanleaf virus (GFLV), tobacco ringspot virus (TRSV), and tomato ringspot virus (ToRSV). Positive ELISA samples were further tested by reverse transcription polymerase chain reaction (RT-PCR) with primers specific for each of the viruses to confirm the ELISA results. Twenty-two samples were infected with at least one of the viruses tested. GLRaV-3 (24.19%) was the most prevalent virus detected followed by GLRaV-1 (12.90%), ToRSV (3.23%), and GLRaV-2 and TRSV (1.61%). This is the first study reporting on the presence of grapevine viruses in New England. Extensive surveys need to be conducted to evaluate the prevalence and economic impact of these viruses on New England vineyards. © 2020 Elsevier Ltd

Recent work in Australia and Africa has shown that heterothermy is widespread among phylogenetically diverse tropical and subtropical mammalian taxa. However, data on the use of heterothermy by Neotropical mammals are relatively scant, and those studies that exist focus on insect-eating bats. We investigated the capacity of fruit-eating Neotropical bats to use heterothermy when exposed to acute cold temperatures, and compared this to previous data focused on insect-eating bats sampled from the same region and time of year. We measured rectal temperatures prior to acute cold exposure (1 hr at an air temperature of 6, 7, or 10°C), and again after exposure. Our data show considerable variation in the thermoregulatory patterns of Neotropical bats, and generally, our results show that smaller bats cool quicker and to a greater extent than larger bats. Our results highlight the importance of energy conservation even in environments in which resources are relatively abundant. © 2020 The Association for Tropical Biology and Conservation

The Florida manatee, Trichechus manatus latirostris, is a fully aquatic, threatened marine mammal for which increased understanding of their physiology, reproduction, and nutrition supports management decisions. Manatees may use taste to distinguish saltwater gradients, toxin detection, food assessment, and social interactions. This study sought to locate and characterize manatee taste buds comparing location, structure, number, and size to other species. Entire heads from manatees (6 males, 4 females) of various ages were obtained. The muzzle, tissue surrounding the nares, oral cavity, and epiglottis were examined grossly for pits and papillae. Tissues were examined using light and transmission electron microscopy. Within the predominant taste bud location, the tongue root, taste bud number was estimated using samples from four animals. The average number of taste buds within the tongue root was 11,534 (range 2,711–23,237) with sparse taste buds located on the soft palate and epiglottis. The location along the lateral surface of the tongue root and bordered by grooves, through which tastants could be easily transported, has functional significance. Large numbers of taste buds within the tongue root suggest that taste is an important component of manatee sensory systems and behavioral research would clarify this. © 2020 Society for Marine Mammalogy